OBO Foundry dashboard analysis¶

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/tmp/ipykernel_887/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    9
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 9 82033.000000 128192.400756 777.0 8675.0 11602.0 112828.0 378207.0
Declaration 9 10441.666667 11064.168337 256.0 2239.0 5628.0 18822.0 32215.0
SubClassOf 8 12705.111111 17078.874176 0.0 407.0 4270.0 21193.0 46130.0
EquivalentClasses 8 2831.000000 3490.687969 0.0 23.0 722.0 6196.0 7863.0
SubAnnotationPropertyOf 6 8.666667 14.017846 0.0 0.0 1.0 8.0 38.0
SubPropertyChainOf 5 11.555556 19.679374 0.0 0.0 1.0 12.0 59.0
SubObjectPropertyOf 4 30.888889 49.998611 0.0 0.0 0.0 51.0 135.0
SymmetricObjectProperty 4 1.111111 1.452966 0.0 0.0 0.0 3.0 3.0
InverseObjectProperties 3 5.888889 9.597453 0.0 0.0 0.0 10.0 25.0
ObjectPropertyDomain 3 8.666667 13.629013 0.0 0.0 0.0 17.0 33.0
ObjectPropertyRange 3 7.000000 11.757976 0.0 0.0 0.0 9.0 29.0
DisjointClasses 3 9.888889 25.300417 0.0 0.0 0.0 6.0 77.0
TransitiveObjectProperty 3 2.555556 5.077182 0.0 0.0 0.0 2.0 15.0
AnnotationPropertyRangeOf 2 0.444444 0.881917 0.0 0.0 0.0 0.0 2.0
ClassAssertion 2 0.555556 1.130388 0.0 0.0 0.0 0.0 3.0
DataPropertyDomain 2 1.222222 2.990726 0.0 0.0 0.0 0.0 9.0
DataPropertyRange 2 0.666667 1.322876 0.0 0.0 0.0 0.0 3.0
InverseFunctionalObjectProperty 1 0.111111 0.333333 0.0 0.0 0.0 0.0 1.0
Rule 1 2.555556 7.666667 0.0 0.0 0.0 0.0 23.0
FunctionalObjectProperty 1 0.222222 0.666667 0.0 0.0 0.0 0.0 2.0
SubDataPropertyOf 1 1.444444 4.333333 0.0 0.0 0.0 0.0 13.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 9 43699.666667 50370.060475 423.0 6972.0 17281.0 70853.0 148398.0
ObjectIntersectionOf 8 4045.888889 5774.053958 0.0 23.0 882.0 7783.0 16711.0
ObjectSomeValuesFrom 8 8244.333333 10233.864837 0.0 116.0 3257.0 18723.0 25091.0
ObjectUnionOf 5 9.444444 15.701203 0.0 0.0 1.0 14.0 48.0
ObjectAllValuesFrom 2 1.222222 2.438123 0.0 0.0 0.0 0.0 6.0
DataSomeValuesFrom 2 0.333333 0.707107 0.0 0.0 0.0 0.0 2.0
ObjectExactCardinality 2 0.444444 1.013794 0.0 0.0 0.0 0.0 3.0
ObjectHasSelf 1 0.111111 0.333333 0.0 0.0 0.0 0.0 1.0
DataHasValue 1 0.444444 1.333333 0.0 0.0 0.0 0.0 4.0
ObjectComplementOf 1 0.222222 0.666667 0.0 0.0 0.0 0.0 2.0
DataExactCardinality 1 0.111111 0.333333 0.0 0.0 0.0 0.0 1.0
ObjectOneOf 1 0.111111 0.333333 0.0 0.0 0.0 0.0 1.0
ObjectHasValue 1 1683.111111 5049.333333 0.0 0.0 0.0 0.0 15148.0

OBO Score (Experimental)

ontology score score_dash score_impact
3 hp 0.613 0.867 0.444
4 maxo 0.486 0.882 0.222
5 mondo 0.446 0.949 0.111
1 ecto 0.431 0.911 0.111
6 oba 0.356 0.889 0.000
8 vbo 0.356 0.889 0.000
2 geno 0.353 0.882 0.000
7 sepio 0.329 0.822 0.000
0 chr 0.329 0.822 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 9.0 0.411000 0.094151 0.329 0.353 0.356 0.446 0.613
score_dash 9.0 0.879222 0.039974 0.822 0.867 0.882 0.889 0.949
score_impact 9.0 0.098667 0.151429 0.000 0.000 0.000 0.111 0.444

OBO dependency graph